Human Ancestry Ontology
The Human Ancestry Ontology (HANCESTRO) provides a systematic description of the ancestry concepts used in the NHGRI-EBI Catalog of published genome-wide association studies.
Summary
The Human Ancestry Ontology (HANCESTRO) provides a systematic description of the ancestry concepts used in the NHGRI-EBI Catalog of published genome-wide association studies.
Download
Use the following URI to download this ontology
- http://purl.obolibrary.org/obo/hancestro.owl
- This should point to: https://raw.githubusercontent.com/EBISPOT/ancestro/master/hancestro_inferred.owl
A non-reasoned version of the ontology is available at https://raw.githubusercontent.com/EBISPOT/ancestro/master/hancestro.owl
A version of HANCESTRO with BFO upper classes is available at https://raw.githubusercontent.com/EBISPOT/ancestro/master/hancestro_bfo.owl
Browsing
- Default browsing in Ontobee: http://www.ontobee.org/ontology/hancestro
- Browsing in OLS: https://www.ebi.ac.uk/ols/ontologies/hancestro
- Browsing in NCBO BioPortal: https://bioportal.bioontology.org/ontologies/HANCESTRO
Products
| hancestro.owl | HANCESTRO | The full version of HANCESTRO in OWL format |
| hancestro_bfo.owl | HANCESTRO BFO | Version of HANCESTRO with BFO upper hierarchy for easier integration with other ontologies |
Usages
- User
- http://www.ebi.ac.uk/efo
- Description
- The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases, and for external projects such as the NHGRI GWAS catalogue. It combines parts of several biological ontologies, such as anatomy, disease and chemical compounds.
- Examples
- User
- https://genepio.org/
- Description
- The Genomic Epidemiology Ontology (GenEpiO) covers vocabulary necessary to identify, document and research foodborne pathogens and associated outbreaks.
- Examples
- User
- http://foodon.org
- Description
- FoodOn (http://foodon.org) is a consortium-driven project to build a comprehensive and easily accessible global farm-to-fork ontology about food, that accurately and consistently describes foods commonly known in cultures from around the world.
- Examples
- ID Space
- hancestro
- PURL
- http://purl.obolibrary.org/obo/hancestro.owl
- License
- CC BY 4.0
- Homepage
- https://github.com/EBISPOT/ancestro
- Contact
- Danielle Welter
- Trackers
- https://github.com/EBISPOT/ancestro/issues
- Domain
- organisms
- Cite
- A standardized framework for representation of ancestry data in genomics studies, with application to the NHGRI-EBI GWAS Catalog