Anatomy Portal
Ontologies
uberon | covers all animals. Can bridge species-specific AOs | |
po | covers all plants | |
fao | covers all multicellular fungi | |
ma | mouse (adult) | |
emapa | mouse (embryonic) | |
ddanat | dicty (slime mold) | |
plana | planaria | |
fma | human | |
ehdaa2 | human (developmental) | |
zfa | zebrafish | |
xao | xenopus | |
fbbt | Drosophila | |
wbbt | C elegans |
Welcome to the OBO Foundry Anatomy Portal!
This community page organizes different OBO anatomy ontologies and describes how they relate to one another.
Upper level
The Common Anatomy Reference Ontology (CARO) provides an upper-level structure that should be used as superclasses in OBO anatomy ontologies.
Subcellular
We take the term anatomy to include subcellular anatomy, which is covered in GO.
Note that some ontologies (WBbt, FBbt) include their own more specific subcellular components
Cells
Note that some ontologies (PO, FBbt) include their own more specific cell types
Gross anatomy
Plants
The Plant Ontology (PO) covers all viridiplantae, and includes cell types as well as tissues/organs
Fungal
The Plant Ontology (PO) covers all multicellular fungi, and includes cell types as well as multi-cell structures
Slime Mold
Animals
Uberon is a multi-species anatom ontology covering metazoa (animals). It can be used to bridge other species-specific animal anatomy ontologies, see the documentation for details.
Species or taxon-specific anatomy ontologies
- Vertebrates
- Non-vertebrate animals
Stage Ontologies
We have a separate github repo:
- https://github.com/obophenotype/developmental-stage-ontologies
- Homepage
- Members
- @cmungall
- @mellybelly
- @dosumis
- @balhoff
- @ANiknejad
- @fbastian
- @jaiswalp