/tmp/ipykernel_583/2802220519.py:3: DeprecationWarning: Pyarrow will become a required dependency of pandas in the next major release of pandas (pandas 3.0), (to allow more performant data types, such as the Arrow string type, and better interoperability with other libraries) but was not found to be installed on your system. If this would cause problems for you, please provide us feedback at https://github.com/pandas-dev/pandas/issues/54466 import pandas as pd
OBO Foundry dashboard analysis¶
Ontologies by number of axioms
Ontologies by number of classes
Ontologies by how many ontologies use it
Different serialisations used
syntax RDF/XML Syntax 3 OWL/XML Syntax 1 Name: count, dtype: int64
Breakdown of used Axiom Types
count | mean | std | min | 25% | 50% | 75% | max | |
---|---|---|---|---|---|---|---|---|
AnnotationAssertion | 4 | 4698.75 | 3046.763132 | 647.0 | 3204.50 | 5525.5 | 7019.75 | 7097.0 |
Declaration | 4 | 620.50 | 481.130266 | 113.0 | 408.50 | 549.0 | 761.00 | 1271.0 |
SubClassOf | 4 | 691.00 | 668.982810 | 157.0 | 389.50 | 468.5 | 770.00 | 1670.0 |
FunctionalObjectProperty | 3 | 1.25 | 0.957427 | 0.0 | 0.75 | 1.5 | 2.00 | 2.0 |
SubObjectPropertyOf | 3 | 69.00 | 76.841829 | 0.0 | 3.75 | 69.0 | 134.25 | 138.0 |
ObjectPropertyDomain | 3 | 38.25 | 56.841153 | 0.0 | 1.50 | 16.0 | 52.75 | 121.0 |
InverseObjectProperties | 3 | 14.50 | 15.198684 | 0.0 | 2.25 | 14.0 | 26.25 | 30.0 |
TransitiveObjectProperty | 3 | 8.00 | 7.164728 | 0.0 | 3.00 | 8.5 | 13.50 | 15.0 |
DisjointClasses | 3 | 12.75 | 14.314911 | 0.0 | 3.00 | 9.5 | 19.25 | 32.0 |
SubAnnotationPropertyOf | 3 | 17.75 | 24.005208 | 0.0 | 4.50 | 9.0 | 22.25 | 53.0 |
EquivalentClasses | 3 | 20.25 | 19.050372 | 0.0 | 6.00 | 22.0 | 36.25 | 37.0 |
ObjectPropertyRange | 2 | 17.50 | 20.355180 | 0.0 | 0.00 | 16.0 | 33.50 | 38.0 |
ReflexiveObjectProperty | 2 | 0.75 | 0.957427 | 0.0 | 0.00 | 0.5 | 1.25 | 2.0 |
SubDataPropertyOf | 2 | 1.00 | 1.414214 | 0.0 | 0.00 | 0.5 | 1.50 | 3.0 |
ClassAssertion | 2 | 80.25 | 159.169459 | 0.0 | 0.00 | 1.0 | 81.25 | 319.0 |
DifferentIndividuals | 2 | 0.75 | 0.957427 | 0.0 | 0.00 | 0.5 | 1.25 | 2.0 |
InverseFunctionalObjectProperty | 2 | 0.50 | 0.577350 | 0.0 | 0.00 | 0.5 | 1.00 | 1.0 |
Rule | 2 | 12.50 | 14.433757 | 0.0 | 0.00 | 12.5 | 25.00 | 25.0 |
SubPropertyChainOf | 2 | 28.00 | 32.424271 | 0.0 | 0.00 | 26.5 | 54.50 | 59.0 |
SymmetricObjectProperty | 2 | 1.75 | 2.061553 | 0.0 | 0.00 | 1.5 | 3.25 | 4.0 |
EquivalentObjectProperties | 1 | 3.00 | 6.000000 | 0.0 | 0.00 | 0.0 | 3.00 | 12.0 |
IrrefexiveObjectProperty | 1 | 0.25 | 0.500000 | 0.0 | 0.00 | 0.0 | 0.25 | 1.0 |
FunctionalDataProperty | 1 | 0.50 | 1.000000 | 0.0 | 0.00 | 0.0 | 0.50 | 2.0 |
DataPropertyRange | 1 | 6.00 | 12.000000 | 0.0 | 0.00 | 0.0 | 6.00 | 24.0 |
DataPropertyDomain | 1 | 27.50 | 55.000000 | 0.0 | 0.00 | 0.0 | 27.50 | 110.0 |
ObjectPropertyAssertion | 1 | 2.50 | 5.000000 | 0.0 | 0.00 | 0.0 | 2.50 | 10.0 |
Breakdown of used OWL Class Expression constructs
count | mean | std | min | 25% | 50% | 75% | max | |
---|---|---|---|---|---|---|---|---|
Class | 4 | 1947.50 | 1405.639475 | 429.0 | 1251.00 | 1780.0 | 2476.50 | 3801.0 |
ObjectSomeValuesFrom | 4 | 391.75 | 526.750653 | 67.0 | 129.25 | 160.5 | 423.00 | 1179.0 |
ObjectIntersectionOf | 3 | 17.50 | 19.087518 | 0.0 | 1.50 | 17.5 | 33.50 | 35.0 |
ObjectUnionOf | 3 | 27.25 | 52.506349 | 0.0 | 0.75 | 1.5 | 28.00 | 106.0 |
DataSomeValuesFrom | 2 | 5.25 | 6.075909 | 0.0 | 0.00 | 5.0 | 10.25 | 11.0 |
ObjectAllValuesFrom | 2 | 5.50 | 7.549834 | 0.0 | 0.00 | 3.0 | 8.50 | 16.0 |
ObjectHasSelf | 2 | 0.50 | 0.577350 | 0.0 | 0.00 | 0.5 | 1.00 | 1.0 |
ObjectOneOf | 2 | 1.00 | 1.414214 | 0.0 | 0.00 | 0.5 | 1.50 | 3.0 |
DataMaxCardinality | 1 | 1.75 | 3.500000 | 0.0 | 0.00 | 0.0 | 1.75 | 7.0 |
DataMinCardinality | 1 | 1.00 | 2.000000 | 0.0 | 0.00 | 0.0 | 1.00 | 4.0 |
ObjectExactCardinality | 1 | 0.25 | 0.500000 | 0.0 | 0.00 | 0.0 | 0.25 | 1.0 |
ObjectMinCardinality | 1 | 0.25 | 0.500000 | 0.0 | 0.00 | 0.0 | 0.25 | 1.0 |
OBO Score (Experimental)
ontology | score | score_dash | score_impact | |
---|---|---|---|---|
0 | afpo | 0.400 | 0.800 | 0.0 |
1 | carolio | 0.379 | 0.758 | 0.0 |
2 | gallont | 0.374 | 0.749 | 0.0 |
3 | lsdao | 0.296 | 0.593 | 0.0 |
OBO Score Summary
count | mean | std | min | 25% | 50% | 75% | max | |
---|---|---|---|---|---|---|---|---|
score | 4.0 | 0.36225 | 0.045581 | 0.296 | 0.3545 | 0.3765 | 0.38425 | 0.4 |
score_dash | 4.0 | 0.72500 | 0.090763 | 0.593 | 0.7100 | 0.7535 | 0.76850 | 0.8 |
score_impact | 4.0 | 0.00000 | 0.000000 | 0.000 | 0.0000 | 0.0000 | 0.00000 | 0.0 |